You are using d = sqrt(dx^2 + dy^2 + dz^2), right? (Where dx = x2 - x1,
etc.)
_______________________________________
Roger S. Rowlett
Gordon & Dorothy Kline Professor
Department of Chemistry
Colgate University
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Hamilton, NY 13346
tel: (315)-228-7245
ofc: (315)-228-7395
fax: (315)-228-7935
email: rrowl...@colgate.edu
On 10/12/2017 2:18 PM, Leigh M wrote:
Anyone know how pymol calculates distance between two atoms?
I wrote a python script that calculates distance using the distance
formula and the xyz coordinates in the pdb, and it differs from the
wizard by ~40%. Any ideas on what might be going on would be helpdul
Thanks!
Leigh
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