Hi Raag, Do the two chains have chain identifiers? If not, then PyMOL's atom sorting will mess things up. Try this:
set retain_order, 1 Cheers, Thomas > On Sep 13, 2017, at 6:40 PM, Raag Saluja <saluja.r...@gmail.com> wrote: > > Hi! > I predicted the structure of a heterodimer using Swiss Model. Then I > simulated it using GROMACS. When I opened the .gro file in PyMOL, it appeared > normal at first. However, when I chose show as cartoon, I got dashed lines. I > have attached a screenshot of the same. This problem did not occur before the > simulation step, nor did it occur when I simulated 1TUB.pdb/1JFF.pdb Can you > please help? > > Thank you and regards, > Raag > <Screen Shot 2017-09-13 at 10.01.58 PM.png> -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
