Hey Thomas, Thanks a lot. I will try and I will let you know how it worked for me.
cheers Karol On Mon, Sep 4, 2017 at 5:34 PM, Thomas Holder <thomas.hol...@schrodinger.com> wrote: > Hi Karol, > > Selecting several shades of red is possible with some scripting. The > following code modifies the b-factor based on RGB color values, and then > selects by b-factor. Change the 0.7 and 0.3 constants if you like to cover a > different range. > > python > from pymol import cmd, stored > def is_red(color): > R, G, B = cmd.get_color_tuple(color) > return R > 0.7 and G < 0.3 and B < 0.3 > stored.is_red = is_red > python end > alter all, b = stored.is_red(color) > select red_atoms, b > 0.5 > > Cheers, > Thomas > >> On Aug 29, 2017, at 2:48 PM, Karol K <karolkas...@gmail.com> wrote: >> >> Hi All, >> >> I have a protein, which is colored by rmsd. >> The .pml coloring scripts have been produced by ProSmart. >> The color spectrum is white, yellow and red, where red denotes the >> highest rmsd value. >> >> Does anyone knows how to select only these AAs, which are colored in red? >> >> thanks > > -- > Thomas Holder > PyMOL Principal Developer > Schrödinger, Inc. > ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
