Hi Michael, This is unexpected. Some quick questions:
- Does the state indicator in the bottom right corner also max out, or does it show all models? - Does the "rebuild" command eventually show the partial/missing models? - Does "set defer_builds_mode, 3" make a difference? https://pymolwiki.org/index.php/Defer_builds_mode Thanks, Thomas > On Jun 6, 2017, at 4:26 PM, R. Michael Garavito <rmgarav...@gmail.com> wrote: > > We’ve been having some problems with Mac PyMol when dealing with PDB files > with 50+ models output from ensemble refinement. The pdb files are large > (up to 200 MB) and can contain up to 100 models. My iMac (OS 10.10.5, 4 GHz > Intel Core i7, 32 GB ram, AMD Radeon R9 M290X 2048 MB) works fine with these > large files. > > However, some of our older Macs (e.g., Mac Pro with 24 GB ram and a quite > reasonable graphics board) fail to load in all the models, maxing out at 51 > models/frames regardless of the number of models/frames in the PDB. We have > seen this on 3 different Macs. Frame 52 also shows a partial load: subunit > A looks fine, but subunitB has only a portion of the polypeptide loaded. > This problems occurs even with PyMol 1.8.6.0 on these Macs. As we need to > run scripts to calculate rms fluctuations and to make some figures, we need > to look at all the models. Any ideas? Has anyone seen this before? > > We are currently testing to see whether this occurs on linux machines. > > Thanks, > > Michael > > **************************************************************** > R. Michael Garavito, Ph.D. > Professor of Biochemistry & Molecular Biology > 603 Wilson Rd., Rm. 513 > Michigan State University > East Lansing, MI 48824-1319 > Office: (517) 355-9724 Lab: (517) 353-9125 > FAX: (517) 353-9334 Email: rmgarav...@gmail.com > **************************************************************** -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
