Hi João,
On Ubuntu 16.04 (you didn't mention what you were running) with gcc-4.9
and "--use-msgpackc=no" I get a working pymol with revision 4170.
Have you tried creating a new user and test pymol from that account?
That should help you identify if it is solely a problem with your own
account.
HTH,
Folmer
On 2017-03-28 03:15, João M. Damas wrote:
Nobody experiencing the same issues? Any tips on what I may be doing
wrong on the installation?
João
On Fri, Mar 17, 2017 at 4:08 PM, João M. Damas <jmda...@itqb.unl.pt
<mailto:jmda...@itqb.unl.pt>> wrote:
Dear all,
I started experiencing segmentation fault on a pymol that I had
installed through the omnia channel on conda.
Then, I decided to install from scratch using this recipe:
https://pymolwiki.org/index.php/Linux_Install#Get_latest_source_from_SVN
<https://pymolwiki.org/index.php/Linux_Install#Get_latest_source_from_SVN>
Still getting the segmentation fault, so maybe something changed
in my system and it's conflicting with?
The segmentation fault is not on launching PyMOL, but rather when
I do stuff: loading a PDB file, building a fragment. Like this:
```
./pymol: line 3: 28505 Segmentation fault "/usr/bin/python2.7"
"/data/joao/maindisk/software/pymol-svn/modules/pymol/__init__.py"
"$@"
```
Curiously, when I load a 1.740 session (.pse file I had saved), it
works (no segmentation fault), I can even perform commands like
select and stuff, and they work. If I load a more recent 1.803
session, it also seg faults:
```
Executive: Loading version 1.803 session...
./pymol: line 3: 29221 Segmentation fault "/usr/bin/python2.7"
"/data/joao/maindisk/software/pymol-svn/modules/pymol/__init__.py"
"$@"
```
Any clues? Am I doing something wrong?
Thanks,
João
--
João M. Damas
PhD Student
Protein Modelling Group
ITQB-UNL, Oeiras, Portugal
Tel:+351-214469613 <tel:21%20446%209613>
--
João M. Damas
PhD Student
Protein Modelling Group
ITQB-UNL, Oeiras, Portugal
Tel:+351-214469613
------------------------------------------------------------------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
------------------------------------------------------------------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
