Hi Albert, For batch processing (no GUI), run PyMOL with -c. See also https://pymolwiki.org/index.php/Command_Line_Options
I fixed the script, it was written for an old PyMOL version. Cheers, Thomas On 25 Jan 2017, at 17:01, Albert <mailmd2...@gmail.com> wrote: > BTW, I try to run the example command line, but it always failed with > messages: > > > PyMOL>pymol2glmol 1tqn > Traceback (most recent call last): > File "/usr/lib64/python2.7/site-packages/pymol/parser.py", line 256, in parse > self.result=apply(layer.kw[0],layer.args,layer.kw_args) > File "/home/albert/install/pymol/Pymol-script-repo/pymol2glmol.py", line > 152, in dump_rep > int(255 * float(bgcolor[1])), int(255 * float(bgcolor[2]))) > IndexError: tuple index out of range > > > Do you have any idea what's the problem? > > THX again. > > > On 01/25/2017 10:46 PM, Thomas Holder wrote: >> Hi Albert, >> >> What kind of HTML content do you expect? A page with a PNG image? Or an >> interactive 3D model? Check out >> this:https://pymolwiki.org/index.php/Pymol2glmol >> >> Cheers, >> Thomas -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, SlashDot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
