Hi Vitaly,
You have several options, but if the loops are nicely bent, the best is
probably doing PCA on the coordinate sets of the loops and calculate the
angle between the smallest eigenvectors.
Is that enough information? Do you insist on drawing the planes?
Cheers,
Tsjerk
On Jan 17, 2017 15:11, "chemocev marker" <jirivit...@gmail.com> wrote:
> Hi
> I am analyzing the dynamics of the loop and interested to define the loop
> as plane. Is there is a way in the pymol, if I can define the loop as plane
> and can measure the angle between these plane in different model??
>
> Best
> J. Vitali
>
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