Hi, Lei Zen The example script in https://pymolwiki.org/index.php/MovieSchool_5 shows smooth changes in camera and object transformation, color and representation change in discrete jumps.
PyMOL does not automatically interpolate colors or transparency, only transformations. Mostly, smooth color changes are used in morphs - when you create a morph, you create a multistate object, which you can color in a range of colors using the spectrum_states.py script. (https://pymolwiki.org/index.php/Spectrum_states). With "State Sweep" you rifle through the different states in your object. Example: viewport 500,500 bg_color white load http://www.rcsb.org/pdb/files//1Q21.pdb load http://www.rcsb.org/pdb/files//1QRA.pdb align 1Q21, 1QRA, cycles=0, object=aln morph QQQ, 1Q21, 1QRA hide all show ribbon #download scripts from https://pymolwiki.org/index.php/Spectrum_states run py_scripts/spectrum_states.py spectrum_states QQQ, ribbon, red purpleblue blue Run this with Movie: Program: State Sweep: ¼ Speed: No Pause Alternatively you can split the animations into enough key frames that the discrete jumps in color or transparency (to fade objects in or out) appear smooth to the observer. Best regards Annemarie Honegger Message: 1 Date: Fri, 18 Nov 2016 02:37:50 +0000 From: ? ? <thunderqu...@outlook.com> Subject: [PyMOL] a pymol problem: cannot transit smoothly between representations in animation To: "pymol-users@lists.sourceforge.net" <pymol-users@lists.sourceforge.net> Message-ID: <sixpr0301mb1019098343f84b674b8dd0d1c3...@sixpr0301mb1019.apcprd03.prod.outlook.com> Content-Type: text/plain; charset="us-ascii" Dear all, I come across the same problem as the link below, which is that my movie made by pymol cannot transit between different representations smoothly. It cannot transit smoothly either when I click the scene buttons. It seems very simple in MovieSchool5 on pymolwiki website. I don't know why it doesn't work for both of us. Thank you very much! The link is here. https://sourceforge.net/p/pymol/mailman/message/35074780/ The command I use is here. [cid:image001.png@01D24185.0450DDB0] Best regards, Lei Zhen ========================================== Name: Lei Zhen Address: Num.501, College of Chemistry, Beijing Normal University No. 19, XinJieKouWai St., HaiDian District, Beijing 100875, P. R. China Email: leiz...@mail.bnu.edu.cn<mailto:leiz...@mail.bnu.edu.cn> / thunderqu...@outlook.com<mailto:thunderqu...@outlook.com> Tel: (+86) 010-58806002 ========================================== -------------- next part -------------- An HTML attachment was scrubbed... -------------- next part -------------- A non-text attachment was scrubbed... Name: image001.png Type: image/png Size: 13920 bytes Desc: image001.png ------------------------------ ------------------------------------------------------------------------------ ------------------------------ _______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users End of PyMOL-users Digest, Vol 126, Issue 2 *******************************************
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