The easiest way to deal with this is setting the valence or valence_mode
individually for the object.
set valence, 0, object1
set valence, 1, object2
Cheers,
Andreas
On Mon, Jun 13, 2016 at 11:56 AM, McIntyre, Patrick <pm...@leicester.ac.uk>
wrote:
> Dear PyMol users,
>
> I have a crystal structure of my protein with an unnatural amino acid
> present. This amino acid has a double bond within it, which I would like to
> display as such. However I would like the surrounding protein side chains
> to not show double bond character. Is this possible at all?
>
> So far, I can either keep valence mode set to '0' and see no double bonds
> across the whole protein, or set to '1' and see all of the double bonds,
> which I don't want.
>
> My question is, is it possible to selectively 'set valency' onto a single
> bond, or is it a global command which is not capable of this fine-tuning? I
> am using MacPyMol if this makes a difference at all?
>
> Thanks for your help,
> Patrick
>
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