Hi Julian,
Thank you so much. I just tested it and it worked as well!
Yours sincerely
Cheng
------------------ Original ------------------
From: "Julian Heinrich";<jul...@joules.de>;
Date: Wed, May 18, 2016 01:37 AM
To: "ZHANG Cheng"<272699...@qq.com>;
"pymol-users"<pymol-users@lists.sourceforge.net>;
Subject: Re: [PyMOL] How to export secondary structure information from a
PDBusing PyMol?
Hi,
in case you haven't solved this yet, the following command prints the residue
number and secondary structure:
iterate n. CA, print resi + ':' + ss
Cheers,
Julian
On Fri, May 13, 2016 at 10:40 PM ZHANG Cheng <272699...@qq.com> wrote:
Dear PyMol friends,
I would like to export the secondary structure of individual residues from a
PDB. Can I ask if I can use PyMol to do that?
I would like something like this:
Residue 1: alpha-helix
Residue 2: beta-sheet
......
I think "http://webclu.bio.wzw.tum.de/cgi-bin/stride/stridecgi.py"; can also do
that. However, I found that one residue is loop in Pymol but is indicated as
"strand" in the website. So I wonder if Pymol can output the secondary
structure of individual residues from a PDB?
Thank you.
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