Yeah, but not my preferred choice. Tried to do this the elegant way, but 
bumping up against Pymol's limits unless Thomas has a workaround.

From: Sampson, Jared M. [mailto:jms2...@cumc.columbia.edu]
Sent: Monday, March 07, 2016 12:15 PM
To: Schubert, Carsten [JRDUS]
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] How to store matrix settings for individual scenes?

Hi Carsten -

I'd probably create new objects and use those for superimposition, rather than 
moving the originals.  That would leave your scenes intact.

Cheers,
Jared

--
Jared Sampson
Columbia University

On Mar 7, 2016, at 12:10 PM, Schubert, Carsten [JRDUS] 
<cschu...@its.jnj.com<mailto:cschu...@its.jnj.com>> wrote:

Hi,

I am trying to create a session file of a multimeric protein, in which each 
monomer is displayed first using the original  matrix settings broken out into 
individual scenes. After that all monomers are overlayed on top of each other 
and the superposition matrices are copied and applied to the ligands, etc. So 
far so good, however once the matrices are applied this also affects the 
matrices for the scenes created previous to the overlay and matrix_copy. Any 
way I can store the matrices in each scene instead of having them applied 
globally once?

Cheers,

                Carsten
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