That seems to have sorted things. Many Thanks
Chris > On 11 Dec 2015, at 13:14, David Hall <li...@cowsandmilk.net> wrote: > > Try the last comment on: > > https://github.com/Homebrew/homebrew-science/issues/2273 > <https://github.com/Homebrew/homebrew-science/issues/2273> > > -David > > On Fri, Dec 11, 2015 at 3:39 AM, Chris Swain <sw...@mac.com > <mailto:sw...@mac.com>> wrote: > Hi, > > I maintain a list of science applications that work under El Capitan > (http://www.macinchem.org/blog/files/c92b0faf48c1bb7dee5eeba1260cff43-1657.php > > <http://www.macinchem.org/blog/files/c92b0faf48c1bb7dee5eeba1260cff43-1657.php>) > and I tried a pre installed version of Pymol and it worked without issue. > However I have had a few readers email me saying they are having problems so > I took a new machine running El Capitan and tried to instal a variety of > cheminformatics tools including Pymol using Homebrew and PIP as described > here (http://www.macinchem.org/reviews/cheminfo/cheminfoMac.php > <http://www.macinchem.org/reviews/cheminfo/cheminfoMac.php>). All worked fine > except Pymol which opened but crashed with the following error. > > Username:~ prompt$ pymol > PyMOL(TM) Molecular Graphics System, Version 1.7.6.0. > Copyright (c) Schrodinger, LLC. > All Rights Reserved. > > Created by Warren L. DeLano, Ph.D. > > PyMOL is user-supported open-source software. Although some versions > are freely available, PyMOL is not in the public domain. > > If PyMOL is helpful in your work or study, then please volunteer > support for our ongoing efforts to create open and affordable scientific > software by purchasing a PyMOL Maintenance and/or Support subscription. > > More information can be found at "http://www.pymol.org > <http://www.pymol.org/>". > > Enter "help" for a list of commands. > Enter "help <command-name>" for information on a specific command. > > Hit ESC anytime to toggle between text and graphics. > > Detected OpenGL version 2.0 or greater. Shaders available. > Detected GLSL version 1.20. > OpenGL graphics engine: > GL_VENDOR: NVIDIA Corporation > GL_RENDERER: NVIDIA GeForce 8600M GT OpenGL Engine > GL_VERSION: 2.1 NVIDIA-10.0.40 310.90.10.05b12 > Detected 2 CPU cores. Enabled multithreaded rendering. > libpng warning: Application built with libpng-1.6.19 but running with 1.5.23 > /usr/local/bin/pymol: line 4: 3628 Segmentation fault: 11 > "/usr/local/opt/python/bin/python2.7" > "/usr/local/Cellar/pymol/1.7.6.0/libexec/lib/python2.7/site-packages/pymol/__init__.py > <http://1.7.6.0/libexec/lib/python2.7/site-packages/pymol/__init__.py>" "$@“ > > Any suggestions? > > Cheers > Chris > > ------------------------------------------------------------------------------ > > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net > <mailto:PyMOL-users@lists.sourceforge.net>) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > <https://lists.sourceforge.net/lists/listinfo/pymol-users> > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > <http://www.mail-archive.com/pymol-users@lists.sourceforge.net> >
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