Hi Smith - Check out the `orient` and `clip` commands.  

http://www.pymolwiki.org/index.php/Orient 
<http://www.pymolwiki.org/index.php/Orient>
http://www.pymolwiki.org/index.php/Clip 
<http://www.pymolwiki.org/index.php/Clip>

Cheers,
Jared

—
Jared Sampson
Graduate Student
Department of Biochemistry and Molecular Biophysics
Columbia University

> On Nov 23, 2015, at 12:15 AM, Smith Liu <smith_liu...@163.com> wrote:
> 
> Dear All,
> 
> Once I have displayed a tetramer PDB by pymol, is any way I can get the 
> central axis of the tetramer and display it? Is any way I can get the 
> cross-section of the tetramer (perpendicular to the central axis) and display 
> it? If the tetramer is asymmetric, then how to get the central axis and 
> cross-section?
> 
> Smith
> 
> 
> 
> 
>  
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Design, debug & build mobile apps & 2D/3D high-impact games for multiple OSs.
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