Dealing with multi-state models is tricky. I wrote a flatten_obj <http://pymolwiki.org/index.php/Flatten_obj> script to combine the multiple states into a single object. (Thanks for the motivation to finally upload my script to the wiki!) This allows you to use the normal align/super/cealign commands to superimpose them as expected. Your example:
run flatten_obj.py fetch 1phz 1j8u, type=pdb1 flatten_obj 1j8u_ba, 1j8u flatten_obj 1phz_ba, 1phz cealign /1phz_ba//A, /1j8u_ba//A Note that the dimer interface shifts somewhat between the two structures, so it may be preferable to superimpose two copies of the 1ju8 asymmetric unit onto both chains of 1phz_ba (or vice versa, depending on which interface you consider more relevant). -Spencer On Thu, Oct 29, 2015 at 1:26 PM, faiza iftikhar <faizaaiftik...@hotmail.com> wrote: > Hi, > > I would like to know is there any way to combine N-terminal of 1phz > (biological assembly structure not asymmetric one) to 1j8u(biological > structure) in Pymol. > > Regards, > Faiza > > > ------------------------------------------------------------------------------ > > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >
------------------------------------------------------------------------------
_______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
