Hi Raag,

You can use align <http://www.pymolwiki.org/index.php/Align> or super
<http://www.pymolwiki.org/index.php/Super>, the main difference is that
super does not use sequence information.

Cheers,

Osvaldo.

On Tue, Oct 20, 2015 at 4:04 PM, Raag Saluja <saluja.r...@gmail.com> wrote:

Hi! how do you align two molecules when you superimpose? Can you please
> tell me the exact command?
>
> Thank you so much and sorry for the bother!
>
> --
> Regards,
> Raag
>
>
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