Hi Tsjerk, It seems everyone is pointing to this (http://www.pymolwiki.org/index.php/Color#Reassigning_B-Factors_and_Coloring <http://www.pymolwiki.org/index.php/Color#Reassigning_B-Factors_and_Coloring>) which I somehow missed. However, they seem to be altering one residue at a time like I’m doing.
Jordan > On Jun 15, 2015, at 11:59 PM, Tsjerk Wassenaar <tsje...@gmail.com> wrote: > > Hi Jordan, > > Yes, although I don't have the answer at hand, it has been given on the user > list several times. You can find it in the archives. > > Cheers, > > Tsjerk > > On Jun 16, 2015 08:16, "Jordan Willis" <jwillis0...@gmail.com > <mailto:jwillis0...@gmail.com>> wrote: > Hi, > > I have a dictionary that has a bunch of values I want to assign to b-factors > in order to color by. In my script: > > for residue in data: > cmd.alter(“resi > {}”.format(residue[‘resnum’]),”b={}”.format(residue[‘value’])) > > This executes the alter command for each residue. For some reason, its taking > forever in my script. Is there something inherently inefficient about alter? > And is there anyway to fix it? Perhaps, assign a bunch of b-factors at once. > > Jordan > > ------------------------------------------------------------------------------ > > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net > <mailto:PyMOL-users@lists.sourceforge.net>) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > <https://lists.sourceforge.net/lists/listinfo/pymol-users> > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > <http://www.mail-archive.com/pymol-users@lists.sourceforge.net>
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