Hi Jorge -
As long as the filenames are different, the molecules should end up in separate
objects. If the filenames are in fact the same (e.g. same filename but in
different folders), try explicitly naming the objects using the PyMOL command
line:
load path/to/the/first/mol1.pdb, first_mol
load path/to/another/mol1.pdb, second_mol
http://www.pymolwiki.org/index.php/Load
Hope that helps.
Cheers,
Jared
--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
http://kong.med.nyu.edu/
On May 5, 2015, at 2:16 PM, Jorge Fernandez de Cossio Diaz
<cos...@cim.sld.cu<mailto:cos...@cim.sld.cu>> wrote:
When I load two molecules into pymol which are very similar, they automatically
get clumped into the same object as different states.
How can I circumvent this behavior? I want to load two molecules which are very
similar into different objects. I know about the "split_states" command, but I
am looking at a bunch of pairs of molecules and running "split_states" every
time I load a pair is a pain.
Is there a command I can use instead of load or a way to call "pymol mol1.pdb
mol2.pdb" so that PyMol knows that mol1.pdb and mol2.pdb should go to two
different objects?
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