There is an "INSTALL" file that provides instructions. The first step,
calling ./configure , generates pdb2pqr.py from pdb2pqr.py.in

If you want to manually do it, it just changes the first line in the file
to point to your python installation. But, since there's a whole bunch of
other things ./configure appears to do, I suggest following the steps in
the INSTALL file.

-David


On Tue, Apr 14, 2015 at 2:39 AM, Brenton Horne <brentonho...@ymail.com>
wrote:

> Hi,
>
> pdb2pqr.py doesn't exist in the pdb2pqr tar.gz file (for either 2.0.0 or
> 1.8 versions; in a previous question I was advised to use the 1.8
> version) and consequently APBS tools doesn't work. I have tried turning
> the pdb2pqr.py.in into pdb2pqr.py by removing the "in" extension, but
> the APBS failed to set up the grid after I did this. Is there any way
> around this?
>
> Thanks for your time,
> Brenton
>
>
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