Hi,
I have skimmed the Label <http://pymolwiki.org/index.php/Label> page on
PyMOL Wiki and it only appears to give examples about how to label
specific atoms and not whole ligands or residues. See I'd like to label
residue 403 as "Ser403", ceftaroline's open form (het ID AI8) as "Open
CFT" and ceftaroline (het ID 1W8) as "CFT" in the structure that has the
PDB ID 3ZG0. I presently have the PyMOL code:
delete all
load 3zg0.pdb1
hide
show cartoon
# Colouring secondary structure
set_color blues, [0.0196078,0.7607843,0.7607843]
color red, ss h
color yellow, ss s
color blues, ss l+""
show sticks, r. 1w8
label (r. 1w8), "CFT"
show sticks, r. ai8
label (r. ai8), "open-chain CFT"
show sticks, r. mur
show sticks, resi 403
color green, resi 403
label (resi 403), "Ser403"
h_add
set valence, 0.2
set_color orange, [1, 0.5, 0]
set_color fluorine, [0.5625,0.875,0.3125]
set_color chlorine, [0.12109375,0.9375,0.12109375]
set_color sulfur, [1,1,0.18750]
# Colouring elements
#color black, elem c and resi 69 and not name c+n+o
color black, elem c and organic
#color blue, elem n and resi 69 and not name c+n+o
color blue, elem n and organic
#color white, elem h and resi 69 and not name c+n+o
color white, elem h and organic
#color red, elem o and resi 69 and not name c+n+o
color red, elem o and organic
#color orange, elem p and resi 69 and not name c+n+o
color orange, elem p and organic
#color fluorine, elem f and resi 69 and not name c+n+o
color fluorine, elem f and organic
#color chlorine, elem cl and resi 69 and not name c+n+o
color chlorine, elem cl and organic
color sulfur, elem s and organic
# Colour backgrond white
bg_color white
remove solvent
With the relevant code indented. The result was
http://i.imgur.com/lXoZmQA.png. The problem, however, is that as you can
see in this image this code doesn't give just a single, individual label
for each of the two ligands and serine 403, rather it appears to label
each individual atom in each of these three molecules of interest. So my
question is how do I get just a single label for each molecule of
interest and not for every atom inside these molecules.
Thanks for your time,
Brenton
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