Which version of PyMOL do you have? Mine is 1.7.4 and it is working just fine.
So in case you have and older version(< 1.3 I guess) it might not work properly.
Lukas
From: Brenton Horne [mailto:brentonho...@ymail.com]
Sent: Friday, March 20, 2015 12:02 AM
To: Lukáš Pravda
Subject: Re: [PyMOL] Fetching PDBs; how to load .cifs provided instead of .pdbs
Thanks for ya help but I'm afraid this isn't working. See it saves the fetched
file as .sf format which it then fails to recognize.
PyMOL>fetch 4V7Y, type = cif
please wait ...
PyMOL>as cartoon
CmdLoad: ".\4v7y.sf" loaded as "4V7Y".
On 19/03/2015 9:31 PM, Lukáš Pravda wrote:
Hi Brenton,
fetch 4v7y, type=cif
is the command you are looking for
All the best
Lukas Pravda
---
CEITEC - Central European Institute of Technology
Masaryk University
Brno, Czech Republic
---
From: Brenton Horne [mailto:brentonho...@ymail.com]
Sent: Thursday, March 19, 2015 4:55 AM
To: pymol-users@lists.sourceforge.net
<mailto:pymol-users@lists.sourceforge.net>
Subject: [PyMOL] Fetching PDBs; how to load .cifs provided instead of .pdbs
Hi,
I have noticed that for some PDBs wwPDB doesn't contain PDB files (e.g., 4V7Y
<http://www.rcsb.org/pdb/explore/explore.do?structureId=4V7Y> ), but rather
they have mmCIF files instead and I was wondering if it was possible to get the
fetch command to fetch these mmCIFs instead of PDBs. Now to be clear, I do
understand how to load mmCIFs that I have downloaded manually from wwPDB by
going to File->Open... but I'd like to know how to get PyMOL to fetch these
files from wwPDB and load them.
Thanks for your time,
Brenton
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