Hi,
Since my edu copy failed after I upgrade to yosemite. I have downloaded pymol
on my iMac 10.10.1 following the fink for 10.10 instructions on scottslab web:
http://scottlab.ucsc.edu/~wgscott/xtal/wiki/index.php/Fink_for_10.10
After setting up fink, I ran sudo apt-get install pymol-py27. I am still quite
new to unix, and have a few questions that I need clarified:
1. I did not uninstall my old copy of MacPyMOL. I assume there is no
interference between different versions?
2. Where exactly is the newly installed pymol stored?
3. I did not notice this before, but I have two copies of MacPyMOL buried in
one of the folders of my PHENIX versions 1.8.3-1479 and 1.9-1692 respectively.
I wasn’t sure if the pymol was already present when I downloaded my phenix or
these are the ones I installed. I can open pymol using command line but not
double clicking the icons in my finder window. Both these versions were shown
to be last opened corresponding to the time I used command line pymol on two
separate time. I am confused now as to when I type pymol in my terminal, which
MacPyMOL is supposed to be opened.
4. I need to do source /sw/bin/init.sh before I can start pymol. Is init.sh
same as starting up fink to do its job? Is there a direct way to open pymol.
Appreciate your advice.
Regards,
Sze Yi
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