Hello
thanks for all your help!
I managed to fix the issue with the ray_transparency_contrast setting.
@Tsjerk Thanks for your help. But this afternoon I have to teach. Maybe
some other day?
Floris
On 14-01-15 20:38, Sampson, Jared wrote:
Thanks for the correction, Thomas. I saw the following in the
terminal window and thought it meant the setting was applied as I
intended:
PyMOL>set spec_reflect, 0, all and not org
Setting: spec_reflect set for 2105 atoms in object "1shv".
PyMOL>set spec_reflect, 1, org
Setting: spec_reflect set for 35 atoms in object “1shv”.
(You’d think I’d know better after having worked with lighting in my
COLLADA export project...)
Perhaps it would be helpful for cmd.set() to output some kind of
warning if a selection argument is given, but the setting can only be
applied globally?
Cheers,
Jared
--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
http://kong.med.nyu.edu/
On Jan 14, 2015, at 1:18 PM, Tsjerk Wassenaar <tsje...@gmail.com
<mailto:tsje...@gmail.com>> wrote:
Hi Thomas,
Thanks for chiming in. I guess this would be a step towards
textures/finishes. I would really like to see more extended support
for those in Pymol. Of course that would mostly serve artistic
purposes, but I'd gladly raise the suggestion that it can do wonders
for highlighting :)
Floris, I can join you in the lab tomorrow afternoon (~15pm?), and we
can have a look what we can do. Maybe a POV-Ray session, like in the
old days :) Maybe I can even find my finish settings somewhere :)
Cheers,
Tsjerk
On Wed, Jan 14, 2015 at 7:03 PM, Thomas Holder
<thomas.hol...@schrodinger.com
<mailto:thomas.hol...@schrodinger.com>> wrote:
Hi Floris, Tsjerk, Jared,
all lighting settings in PyMOL are only global, so setting them
on objects or selections will have no effect. This is not a bug,
bug of course can be considered a missing feature. We will check
how difficult this would be to implement on the object or atom level.
Cheers,
Thomas
On 14 Jan 2015, at 12:07, Floris van Eerden
<f.j.van.eer...@rug.nl <mailto:f.j.van.eer...@rug.nl>> wrote:
> Hello Jared and Tsjerk,
>
> I tried your suggestion, but unfortunately it does not work on
my computer.
> When I type the command
> set spec_reflect, 0, all
> Pymol gives the following output:
> -->Setting: spec_reflect set to 0.00000 in 8 objects.
>
> So it seems okay. But however when I raytrace, I still get all
reflections.
> When I subsequently type
> set spec_reflect, 0
> and then raytrace, the reflections are really turned off.
>
> Could this be a bug, or do I forget something?
>
> Thanks
>
> Floris
>
> On 09-01-15 16:55, Sampson, Jared wrote:
>> set spec_reflect, 0, all and not organic
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
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