Thanks Jared.
On Mon, Jan 5, 2015 at 1:35 PM, Sampson, Jared <jared.samp...@nyumc.org>
wrote:
> Hi Yarrow -
>
> 1. Yes, according to the wiki <http://www.pymolwiki.org/index.php/Dots>, the
> dots are located on the vdW surface unless the `dot_solvent` setting is
> turned on (in which case they’re on the solvent accessible surface).
>
> 2. Based on the settings listed with “dot” in their names, it doesn’t
> look like dot_transparency is currently available.
>
> Hope that helps.
>
> Cheers,
> Jared
>
> --
> Jared Sampson
> Xiangpeng Kong Lab
> NYU Langone Medical Center
> http://kong.med.nyu.edu/
>
>
>
>
>
>
> On Dec 30, 2014, at 6:48 PM, Yarrow Madrona <acacia.madr...@ucsf.edu>
> wrote:
>
> Hell Pymolers,
>
> 1. Does anyone know what the dot representation for a residue
> represents? Is it the van der waals radii?
>
> 2. Is there a way to draw transparency for the dots?
>
> -Yarrow
>
>
> --
> Yarrow Madrona, Ph.D.
> *Postdoctoral Scholar*
> University of California, San Francisco
> Department of Pharmaceutical Chemistry
> Rm N551, 600 16th street
> San Francisco CA, 94143
>
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> ------------------------------------------------------------------------------
> Dive into the World of Parallel Programming! The Go Parallel Website,
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> your
> hub for all things parallel software development, from weekly thought
> leadership blogs to news, videos, case studies, tutorials and more. Take a
> look and join the conversation now. http://goparallel.sourceforge.net
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--
Yarrow Madrona, Ph.D.
*Postdoctoral Scholar*
University of California, San Francisco
Department of Pharmaceutical Chemistry
Rm N551, 600 16th street
San Francisco CA, 94143
------------------------------------------------------------------------------
Dive into the World of Parallel Programming! The Go Parallel Website,
sponsored by Intel and developed in partnership with Slashdot Media, is your
hub for all things parallel software development, from weekly thought
leadership blogs to news, videos, case studies, tutorials and more. Take a
look and join the conversation now. http://goparallel.sourceforge.net
_______________________________________________
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