The optimize plugin loads and seems to work, i.e. it runs and produces some output that looks reasonable. Is there a proper test for the plugin? I tried to compare results to pymol on Ubuntu 14.10 but that version is unstable...
Christoph On 12/20/2014 3:32 PM, Osvaldo Martin wrote: > Hi Christoph, > > I do not use Windows. I would be very thankful if you could check that > the optimize-plugin works with the 64 bit version of OpenBabel that you > mention. Could you please confirm that? > > Thanks in advance. > Osvaldo. > > On Sat, Dec 20, 2014 at 8:14 PM, Christoph Gohlke <cgoh...@uci.edu > <mailto:cgoh...@uci.edu>> wrote: > > Try the 64 bit version of OpenBabel at > <http://www.lfd.uci.edu/~gohlke/pythonlibs/#openbabel > <http://www.lfd.uci.edu/%7Egohlke/pythonlibs/#openbabel>> > > Christoph > > > On 12/20/2014 1:12 PM, Osvaldo Martin wrote: > > Hi Hena, > > > > Regarding Optimize plugin. You need to install OpenBabel and OpenBabel > > Python bindings (see instructions here > > <http://openbabel.org/wiki/Get_Open_Babel>). As far as I know for > > Windows there is not a 64 bit version of OpenBabel and hence if you want > > to use openbabel and optimize plugin on a 64 bit Windows you have to > > instal the 32-bit version of Python and PyMOL. > > > > Regards, > > Osvaldo. > > > > > > On Sat, Dec 20, 2014 at 4:08 PM, Hena Dutta <hdutt...@gmail.com > <mailto:hdutt...@gmail.com> > > <mailto:hdutt...@gmail.com <mailto:hdutt...@gmail.com>>> wrote: > > > > Dear Pymol Users, > > I installed pymol 1.7.2.1 in my laptop (windows 8.1) and found some > > errors. Please see the highlighted portion below. > > > > How can I see stereo, although it has been enabled? > > I installed Openbabel, but some plug-in are not being initialized. > > Could you please suggest how can I solve these problems? > > > > Best regards, > > Hena > > > > > > After running the program I found some > > PyMOL(TM) Molecular Graphics System, Version 1.7.2.1. > > Copyright (c) Schrodinger, LLC. > > All Rights Reserved. > > > > Created by Warren L. DeLano, Ph.D. > > > > PyMOL is user-supported open-source software. Although some > > versions > > are freely available, PyMOL is not in the public domain. > > > > If PyMOL is helpful in your work or study, then please > volunteer > > support for our ongoing efforts to create open and affordable > > scientific > > software by purchasing a PyMOL Maintenance and/or Support > > subscription. > > > > More information can be found at "http://www.pymol.org";. > > > > Enter "help" for a list of commands. > > Enter "help <command-name>" for information on a specific > command. > > > > Hit ESC anytime to toggle between text and graphics. > > > > Detected OpenGL version 2.0 or greater. Shaders available. > > Detected GLSL version 4.40. > > OpenGL graphics engine: > > GL_VENDOR: NVIDIA Corporation > > GL_RENDERER: GeForce GTX 670M/PCIe/SSE2 > > GL_VERSION: 4.4.0 NVIDIA 344.60 > > Detected 8 CPU cores. Enabled multithreaded rendering. > > > > > > > > OpenGL quad-buffer stereo 3D detected and enabled. > > Executive: Loading version 1.600 session... > > Unable to initialize plugin 'mtsslDockGui' > > (pmg_tk.startup.mtsslDockGui). > > > <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< > > > > Optimize plug-in needs openbabel to be installed in your system, > > please follow the instructions at > >http://openbabel.org/wiki/Get_Open_Babel > > > > > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > > Unable to initialize plugin 'mtsslWizard' > (pmg_tk.startup.mtsslWizard). > > Unable to initialize plugin 'mtsslTrilaterate' > > (pmg_tk.startup.mtsslTrilaterate). > > > > > ------------------------------------------------------------------------------ > > Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server > > from Actuate! Instantly Supercharge Your Business Reports and > Dashboards > > with Interactivity, Sharing, Native Excel Exports, App Integration & > > more > > Get technology previously reserved for billion-dollar corporations, > FREE > > >http://pubads.g.doubleclick.net/gampad/clk?id=164703151&iu=/4140/ostg.clktrk > > _______________________________________________ > > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net > <mailto:PyMOL-users@lists.sourceforge.net> > > <mailto:PyMOL-users@lists.sourceforge.net > <mailto:PyMOL-users@lists.sourceforge.net>>) > > Info Page:https://lists.sourceforge.net/lists/listinfo/pymol-users > > > Archives:http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > > > > > > > > ------------------------------------------------------------------------------ > > Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server > > from Actuate! Instantly Supercharge Your Business Reports and Dashboards > > with Interactivity, Sharing, Native Excel Exports, App Integration & > more > > Get technology previously reserved for billion-dollar corporations, FREE > > >http://pubads.g.doubleclick.net/gampad/clk?id=164703151&iu=/4140/ostg.clktrk > > > > > > > > _______________________________________________ > > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net > <mailto:PyMOL-users@lists.sourceforge.net>) > > Info Page:https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives:http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > > ------------------------------------------------------------------------------ > Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server > from Actuate! Instantly Supercharge Your Business Reports and Dashboards > with Interactivity, Sharing, Native Excel Exports, App Integration & > more > Get technology previously reserved for billion-dollar corporations, FREE > > http://pubads.g.doubleclick.net/gampad/clk?id=164703151&iu=/4140/ostg.clktrk > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net > <mailto:PyMOL-users@lists.sourceforge.net>) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > ------------------------------------------------------------------------------ Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=164703151&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
