Hi Erica,
I prefer to leave the vdw value untouched, as this may affect operations
that rely on this value.
Instead you can alter the sphere scale:
set sphere_scale, <value>, <selection>
e.g.:
set sphere_scale, 1.5, hetatm
show_as spheres
will increase the sphere scale of heteroatoms (i.e. non-bonded) to 1.5
Cheers,
Andreas
On Thu, Nov 20, 2014 at 3:41 PM, Matthew Baumgartner <mp...@pitt.edu> wrote:
> Hi,
> Just to chime in, you might need to call 'sort' and/or 'rebuild' after
> using the alter command to see the changes.
> Matt Baumgartner
>
>
> On 11/20/2014 08:20 AM, Osvaldo Martin wrote:
>
> Hi Erica,
>
> I think something like:
>
> alter name ca, vdw=10
>
> should help. Change "10" for the value you want.
>
>
> Best Regards,
> Osvaldo.
>
> On Wed, Nov 19, 2014 at 11:16 AM, Erica Valentini <er...@embl-hamburg.de>
> wrote:
>
>> Dear all,
>>
>> I would like to change the size of nonbonded spheres.
>> They are nonbonded c-alpha atoms not heteroatoms therefore I don't
>> know how to specifically select them in order to change them.
>>
>> Thanks a lot in advance,
>>
>> Erica
>>
>> --
>> Erica Valentini
>>
>> EMBL-Hamburg
>> Notkestrasse 85,
>> +49 040 899 02 182
>>
>>
>>
>>
>>
>>
>>
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