Thanks, I figured it was something small. Matt On 10/20/2014 10:42 PM, Thomas Holder wrote: > Hi Matt, > > looks like a partial build after header changes. Please remove the "build" > directory and rebuild (our setup.py is not tracking header dependancies when > doing incremental builds). > > Thanks, > Thomas > > On 20 Oct 2014, at 19:10, Matthew Baumgartner <mp...@pitt.edu> wrote: > >> Hi, >> I updated pymol to r4098 and now it crashes on launch. I'm assuming that >> it was something I did, but I can't figure out what. >> Thanks for your help, >> Matt >> >> $ pymol >> Traceback (most recent call last): >> File "/usr/local/lib/python2.7/dist-packages/pymol/__init__.py", line >> 71, in <module> >> import pymol >> File "/usr/local/lib/python2.7/dist-packages/pymol/__init__.py", line >> 533, in <module> >> import pymol._cmd >> ImportError: /usr/local/lib/python2.7/dist-packages/pymol/_cmd.so: >> undefined symbol: _Z27OVLexicon_BorrowFromCStringP10_OVLexiconPc >> >> >> The install process seems to go fine except for the git thing (I checked >> it out using svn). >> >> $ sudo python setup.py build install >> fatal: Not a git repository (or any parent up to mount point /home) >> Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). >> running build >> running build_py >> running build_ext >> running install >> running install_lib >> running install_egg_info >> Removing /usr/local/lib/python2.7/dist-packages/pymol-1.7.3.1.egg-info >> Writing /usr/local/lib/python2.7/dist-packages/pymol-1.7.3.1.egg-info >> copying data -> /usr/local/lib/python2.7/dist-packages/pymol/pymol_path/data >> copying test -> /usr/local/lib/python2.7/dist-packages/pymol/pymol_path/test >> copying scripts -> >> /usr/local/lib/python2.7/dist-packages/pymol/pymol_path/scripts >> copying examples -> >> /usr/local/lib/python2.7/dist-packages/pymol/pymol_path/examples
------------------------------------------------------------------------------ Comprehensive Server Monitoring with Site24x7. Monitor 10 servers for $9/Month. Get alerted through email, SMS, voice calls or mobile push notifications. Take corrective actions from your mobile device. http://p.sf.net/sfu/Zoho _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
