Hi Chen, I once wrote a "save_colored_fasta" function which exports an HTML file with the colored sequence. It's included in psico: http://pymolwiki.org/index.php/psico
Cheers, Thomas Chen Zhao wrote, On 10/19/14 09:52: > Dear Tsjerk, > > I just got a chance to test the code and it works great for me. Now my > task becomes to "how to convert RGB codes in an efficient way". > > Anyway, thank you so much! > > Best, > Chen > > On Sat, Oct 18, 2014 at 2:43 AM, Tsjerk Wassenaar <tsje...@gmail.com> wrote: > > Ni hao Chen Zhao, > > This works for me: > > col=[] > iterate n. ca, col.append((chain,resi,name,cmd.get_color_tuple(color))) > print col > > Cheers, > > Tsjerk > > > On Sat, Oct 18, 2014 at 4:57 AM, Chen Zhao <chenzhaoh...@gmail.com> wrote: > > Dear all, > > Is it possible to get the color code of each residue if I color > the whole molecule by B-factor using spectrum? I would like to > make a figure with the same colors on the primary sequence. > > Thank you so much in advance. > > Best, > Chen > > -- > Tsjerk A. Wassenaar, Ph.D. -- Thomas Holder PyMOL Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Comprehensive Server Monitoring with Site24x7. Monitor 10 servers for $9/Month. Get alerted through email, SMS, voice calls or mobile push notifications. Take corrective actions from your mobile device. http://p.sf.net/sfu/Zoho _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
