<hand slapping forehead>
Doh! Thanks.
From: David Hall [mailto:li...@cowsandmilk.net]
Sent: Monday, October 06, 2014 1:00 PM
To: Soisson, Stephen M
Cc: <pymol-users@lists.sourceforge.net>
Subject: Re: [PyMOL] Help with rms_cur command
almost definitely is
http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg00001.html
-David
On Mon, Oct 6, 2014 at 12:17 PM, Soisson, Stephen M
<stephen_sois...@merck.com<mailto:stephen_sois...@merck.com>> wrote:
Hi everyone-
I’m having a few issues with the rms_cur command that I am hoping someone can
help with.
I’ve pre-aligned several structures using 2 of 3 chains for the alignment. I
now wish to calculate the rmsd over just a portion of the third chain without
doing any further alignment. It looks like rms_cur is the right command for
this.
I made two new selections (sele1 from pdb1, and sele2 from pdb2).
I now try: rms_cur sele1, sele2
And I get an error “No atoms selected”
I’ve tried various permutations of other selection syntax but to no avail.
Any suggestions greatly appreciated.
Thanks-
Steve
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