Dear Pymol users!
I've decided to open new topic focused on the implementation of the common
shell utilities like grep awk and sed for the structural bioinformatics
tasks like processing and editing of the large sets of pdbs.
In my current task I need to copy all lipids from one pdb (called it ref)
to another call it tar_i.pdb (both files have the same 3D shape and have
been superimposed before that): so in that case I guess lipids could be
recognized by residue name in pdb file (PPC) as well as by its #4 column
number (what is actually do grep). So the algorithm might be: select from
the ref.pdb all strings where #4 column is PPC and merge it (by means of
CAT I guess) with the tar_i.pdb. Please show me some example of the
one-line method of this realization.
Thanks,
James
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