Dear PyMol users!
I'd like to find possibilities for running of some pymol commands from the
terminal. For instance in my case I' d like perform 2 simple steps (both in
terminal not in the pymol GUI)
to remove water and ions from my target input pdb (typical I do it via
gromacs editconf)
superimpose target.pdb against reference.pdb ( i do it by means of tmalign
utility)
Thanks for help,
James
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