Hej,
I haven't tested, but the grid_mode should work, all you need to do is
correct the underscore typo:
set grid_mode, 1 # without _
set grid_slot, 2, object2
set grid_slot, 1, object1
Picture size and quality is not controlled by viewport unless you are
making a movie, in that case set viewport, ray_trace_frames and
movie_quality:
cmd.viewport(800,600)
cmd.set('ray_trace_frames',1)
cmd.set('movie_quality',100)
#Then use either:
cmd.mpng('example')
#or
cmd.movie.produce('example.mpg',mode='ray', preserve=0, quality=100)
I your case, however, a single image is best made using png:
e.g.
cmd.png('example.png', '15cm', '10cm', dpi=300, ray=1)
this will give you a 15x10 cm image at 300 dpi, regardless of viewport.
http://www.pymolwiki.org/index.php/Png
About starting in fullscreen:
using the command line option '-e' should make pymol start in fullscreen
this will probably not work with '-c', but you can open your script from
another shortcut.
http://www.pymolwiki.org/index.php/Command_Line_Options
Hope this helps,
/Andreas
On Thu, Jun 19, 2014 at 5:33 AM, J.R. W <jwillis0...@gmail.com> wrote:
> Hi,
>
> What I’d like to do is set_grid_mode_1, ray trace, and then output a png
> in batch mode (-c)
>
>
> However if you code this in the .pml:
>
> set_grid_mode, 1
> set grid_slot, 2, object2
> set grid_slot, 1, object1
>
> viewport 1000,1000 #not sure how to get fullscreen this maybe OS specific
>
> ray 1000,1000
> png somepic.png
> cmd.save("lookatthis.pse”)
>
> Grid mode* does not* show up in the picture and the viewport in the
> session is still the default window size. However, grid mode *does* work
> in the session.
>
> So my question(s) are this:
>
> 1. Can you use grid mode in batch mode scripts to output an image?
> 2. Can you encode a full screen GUI in the pymol session so when you open
> up the session, it is full screen?
>
> Using MacPyMOL latest release, can switch to X11 if necessary.
>
> Thanks so much!
>
> Jordan
>
>
>
>
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Find What Matters Most in Your Big Data with HPCC Systems
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Leverages Graph Analysis for Fast Processing & Easy Data Exploration
http://p.sf.net/sfu/hpccsystems
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