Hi, And you can use get_raw_distances script at http://www.pymolwiki.org/index.php/Get_raw_distances to get detailed information about contacts.
Best regards, Takanori Nakane On 2014-05-27 15:24, Sampson, Jared wrote: > Hi Merlin - > > Try limiting the distances shown to those between atoms in specific > selections using the `distance` command. For example, to show H-bonds > to solvent, disable the “my_obj_pol_conts” object created by the > technical preset and use the command: > > distance my_dist, my_obj and not solvent, my_obj and solvent, > cutoff=3.5 > > Make sure to specify a cutoff or you’ll get every pair of polar > atoms between your selections. > > Hope that helps. > > Cheers, > Jared > > -- > Jared Sampson > Xiangpeng Kong Lab > NYU Langone Medical Center > http://kong.med.nyu.edu/ [2] > > On May 27, 2014, at 3:33 AM, 天元 <422294...@qq.com> wrote: > >> Dear PyMol users! >> >> I'm analysing polar contacts by "preset:technical". I got so many >> yellow bar measurements that I can't count the number. >> >> IS there any else way to count the number of all polar contacts ? >> >> Thanks for help, >> >> Merlin >> > ------------------------------------------------------------------------------ >> The best possible search technologies are now affordable for all >> companies. >> Download your FREE open source Enterprise Search Engine today! >> Our experts will assist you in its installation for $59/mo, no >> commitment. >> Test it for FREE on our Cloud platform anytime! >> > http://pubads.g.doubleclick.net/gampad/clk?id=145328191&iu=/4140/ostg.clktrk_______________________________________________ >> [1] >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: >> http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > ------------------------------------------------------------ > This email message, including any attachments, is for the sole use of > the intended recipient(s) and may contain information that is > proprietary, confidential, and exempt from disclosure under applicable > law. Any unauthorized review, use, disclosure, or distribution is > prohibited. If you have received this email in error please notify the > sender by return email and delete the original message. Please note, > the recipient should check this email and any attachments for the > presence of viruses. The organization accepts no liability for any > damage caused by any virus transmitted by this email. > ================================= > > Links: > ------ > [1] > http://pubads.g.doubleclick.net/gampad/clk?id=145328191&iu=/4140/ostg.clktrk_______________________________________________ > [2] http://kong.med.nyu.edu/ > > ------------------------------------------------------------------------------ > The best possible search technologies are now affordable for all > companies. > Download your FREE open source Enterprise Search Engine today! > Our experts will assist you in its installation for $59/mo, no > commitment. > Test it for FREE on our Cloud platform anytime! > http://pubads.g.doubleclick.net/gampad/clk?id=145328191&iu=/4140/ostg.clktrk > > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ The best possible search technologies are now affordable for all companies. Download your FREE open source Enterprise Search Engine today! Our experts will assist you in its installation for $59/mo, no commitment. Test it for FREE on our Cloud platform anytime! http://pubads.g.doubleclick.net/gampad/clk?id=145328191&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
