hi,
good idea, it runs from the command line after adding
/pymol/ext/lib to my library path
but the plugin still crashes.
something is odd about my APBS plugin setup.
if i even just click to change the file locations
it crashes.
the other plugins seem fine.
thanks
jpd
________________________________
From: "Schubert, Carsten [JRDUS]" <cschu...@its.jnj.com>
To: jp d <yo...@yahoo.com>; "pymol-users@lists.sourceforge.net"
<pymol-users@lists.sourceforge.net>
Sent: Tuesday, February 11, 2014 12:14 PM
Subject: RE: [PyMOL] apbs plugin
Hi jpd,
try running APBS directly just using the .in file generated from a failed run.
That may provide a clue as to where the problem is, i.e. within APBS itself or
within the plugin. If it is APBS, which is throwing the error you may want to
try to grab an updated version or the source code to compile yourself.
HTH
Carsten
From:jp d [mailto:yo...@yahoo.com]
Sent: Tuesday, February 11, 2014 2:52 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] apbs plugin
hi,
anyone else having trouble with the apbs plugin?
i keep crashing as soon as i try to do anything.
if i select 'Choose externally generated PQR'
or 'run APBS' i get this
In show error 1
alloc: invalid block: 0x2aaaac29fb78: 0 0
Abort
this is with pymol 1.7
ubuntu 12.04
using 1FAS fetched from the pdb
thanks
jpd
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