Oh, I see what your saying. This is a python question.
from sys import argv
c_arg1 = argv[1]
c_arg2 = argv[2]
from pymol import cmd, stored
def align_heme(arg1, arg2 ):
cmd.load(arg1)
cmd.load(arg2)
cmd align(arg1,arg2)
#cmd.create(obj1, arg1) #There is no need to create an object here.
align_heme(c_arg1,c_arg2)
On Feb 4, 2014, at 6:57 PM, Yarrow Madrona <amadr...@uci.edu> wrote:
> Hello,
>
> I am making a script that loads in two molecules as arguments in the command
> line. I want to then align these molecules and make a pretty picture of the
> molecules that were input as arguments in the comand line but I am not sure
> how to name them as objects. I don't know how to select the new objects
> because they will have different names depending on the inputed arguments. My
> attempt is below.
>
> -Yarrow
> ----------------------------------------------------------------------------------------------------------
>
> from sys import argv
> my_argv = argv[1:]
> print my_argv[0], my_argv[1]
>
> from pymol import cmd, stored
>
> def align_heme(arg1, arg2 ):
> cmd.load(arg1)
> cmd.load(arg2)
> cmd.create(obj1, arg1) #I know this line won't work. I need to use
> the #object name. but it depends
> on the input.
>
> ------------------------------------------------------------------------------
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