Sorry, I got my versions crossed. I had the same issues with 1.6, it worked
again with 1.7. Nevertheless I'd try running the .in file separately to debug
what is going on behind the scenes.
-C.
From: Schubert, Carsten [JRDUS]
Sent: Wednesday, January 22, 2014 4:57 PM
To: Seth Harris; pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] APBS plug in (2.1) with PyMOL v1.7
Hi Seth,
I had problems with the underlying APBS version (1.4 I believe) under Windows
in Pymol 1.7. It croaked with an memory allocation error, which I only found
after I ran the .in file manually in APBS. Try that. You can either install an
upgraded version of APBS or switch to Pymol 1.8, which has a "working" APBS
version.
HTH
Carsten
From: Seth Harris [mailto:set...@gmail.com]
Sent: Wednesday, January 22, 2014 4:16 PM
To: pymol-users@lists.sourceforge.net<mailto:pymol-users@lists.sourceforge.net>
Subject: [PyMOL] APBS plug in (2.1) with PyMOL v1.7
Hi all,
I was trying to use the APBS plug in with PyMOL version 1.7 and I'm getting
this error with pymol generated files not being found in the tmp directory:
Could not find
/var/folders/ZV/ZV5Pv67hjYmI8-m0PQU0ElL-r0o/-Tmp-/pymol-generated.dx so
searching for
/var/folders/ZV/ZV5Pv67hjYmI8-m0PQU0ElL-r0o/-Tmp-/pymol-generated-PE0.dx
ObjectMapLoadDXFile-Error: Unable to open file!
ObjectMapLoadDXFile: Does
'/var/folders/ZV/ZV5Pv67hjYmI8-m0PQU0ElL-r0o/-Tmp-/pymol-generated-PE0.dx'
exist?
It is true that neither of these files exist there, though pymol-generated.pqr,
.in and .pdb are there.
I was attempting this with a PDB file that worked in earlier versions, so I
don't think the problem is with the input. Is it working for others?
Cheers,
Seth
Also, BTW, in the visualization GUI for several versions I've had misbehaving
buttons where some of the update field lines end up actually controlling the
isosurfaces and not doing what they are advertised to do.
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