Thank you thank you! I will try that later today--I do appreciate the help. Did
I say thank you yet? Suzanne
________________________________
From: David Hall [li...@cowsandmilk.net]
Sent: Monday, January 20, 2014 8:34 AM
To: Lapolla, Suzanne M (HSC)
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Still need help with fetch and pymol 1.7
I think there's a bug in python's code, not pymol's
In the file that it describes at the end ( C:\Python27\lib\mimetypes.py ) , you
should change line 250 from:
except UnicodeEncodeError:
to
except (UnicodeEncodeError,UnicodeDecodeError):
keeping the indentation in the file and so on. Then the code will skip the
entries in the windows registry that are causing issues.
-David
On Mon, Jan 20, 2014 at 8:40 AM, Lapolla, Suzanne M (HSC)
<suzanne-lapo...@ouhsc.edu<mailto:suzanne-lapo...@ouhsc.edu>> wrote:
I am posting this again as I have still not figured out why I am unable to
fetch or use the pdb plugin loader with pymol 1.7 I have cut/copied/pasted the
error msg I get below. I have tried uninstalling and reinstalling python 2.7.6
as well as python 1.7 (I have windows 64 bit --so I tried the 64 bit version
1st, and when that did not work I unindtalled adn then re-installed using the
windows 32 bit version. (I prev had pymol 1.3 but uninstalled that as well).
This forum has been a great source of help for my before so hope yoiu guys can
help again! Thank you.
PyMOL>fetch 4bd2
please wait ...
Exception in thread Thread-4:
Traceback (most recent call last):
File "C:\Python27\lib\threading.py", line 810, in __bootstrap_inner
self.run()
File "C:\Python27\lib\threading.py", line 763, in run
self.__target(*self.__args, **self.__kwargs)
File "C:\Python27\lib\site-packages\pymol\commanding.py", line 561, in wrapper
func(*args, **kwargs)
File "C:\Python27\lib\site-packages\pymol\importing.py", line 1348, in
_multifetch
discrete, multiplex, zoom, type, path, file, quiet, _self)
File "C:\Python27\lib\site-packages\pymol\importing.py", line 1292, in _fetch
contents = internal.file_read(url)
File "C:\Python27\lib\site-packages\pymol\internal.py", line 308, in file_read
handle = urllib.urlopen(finfo)
File "C:\Python27\lib\urllib2.py", line 127, in urlopen
return _opener.open(url, data, timeout)
File "C:\Python27\lib\urllib2.py", line 404, in open
response = self._open(req, data)
File "C:\Python27\lib\urllib2.py", line 422, in _open
'_open', req)
File "C:\Python27\lib\urllib2.py", line 382, in _call_chain
result = func(*args)
File "C:\Python27\lib\urllib2.py", line 1403, in ftp_open
mtype = mimetypes.guess_type(req.get_full_url())[0]
File "C:\Python27\lib\mimetypes.py", line 297, in guess_type
init()
File "C:\Python27\lib\mimetypes.py", line 358, in init
db.read_windows_registry()
File "C:\Python27\lib\mimetypes.py", line 258, in read_windows_registry
for subkeyname in enum_types(hkcr):
File "C:\Python27\lib\mimetypes.py", line 249, in enum_types
ctype = ctype.encode(default_encoding) # omit in 3.x!
UnicodeDecodeError: 'ascii' codec can't decode byte 0xd7 in position 2: ordinal
not in range(128)
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