I would like to create a module for pymol which accepts several
selections for processing. The number of selections passed to the
modules is not fixed and thus I want to pass a list of selections into
the applications. I have tried something like the following.
from pymol import cmd, stored, CmdException
class Helix(object):
def __init__(self):
self.selection = None
def my_module(*selections):
helices = [Helix() for x in selections]
for helix, sele in zip(helices, selections):
helix.selection = sele
""" Do some more things with these selections"""
Within pymol I load it up and import the module without any trouble. I
make several selections and try to pass them in as follows.
sele S1, resi 1-10
sele S2, resi 11-15
sele S3, resi 16-30
import my_module
my_module S1, S2, S3
I receive the following error
Traceback (most recent call last):
File
"/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parser.py", line
254, in parse
TypeError: my_module() got an unexpected keyword argument '_self'
I have tried modifying the code as follows.
def my_module(selections):
...
I get an error that my_module expects only one argument.
It has been suggested that I pass a list of strings and then access the
selections based on the string name of the selections, however, I have
not been able to find the syntax to put this into the code.
Thanks.
David
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