Dear PyMOLers,
I can set the grid in the apbs_tools gui using the default file locations
(they are correct; I checked), but I get kernel dump when I try to run apbs.
A gui pops up with the message that MacPyMOL crashed although the PyMOL guis
are still open and functional. The pop-u gui gives the following error message.
Best regards,
Blaine
Process: MacPyMOL [7673]
Path: /Applications/PyMOLX11Hybrid160.app/Contents/MacOS/MacPyMOL
Identifier: MacPyMOL
Version: ??? (???)
Code Type: X86-64 (Native)
Parent Process: MacPyMOL [7612]
Date/Time: 2013-08-30 09:09:52.027 -0500
OS Version: Mac OS X 10.6.8 (10K549)
Report Version: 6
Interval Since Last Report: 149553 sec
Crashes Since Last Report: 23
Per-App Crashes Since Last Report: 8
Anonymous UUID: 95441EA8-D0B3-46A9-8BC8-2FD7A7B627D1
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0xfffffffffffffff8
Crashed Thread: Unknown
Backtrace not available
Unknown thread crashed with X86 Thread State (64-bit):
rax: 0x0000000000000055 rbx: 0x0000000000000000 rcx: 0x0000000000000000
rdx: 0x0000000000000000
rdi: 0x0000000000000000 rsi: 0x0000000000000000 rbp: 0x0000000000000000
rsp: 0x0000000000000000
r8: 0x0000000000000000 r9: 0x0000000000000000 r10: 0x0000000000000000
r11: 0x0000000000000000
r12: 0x0000000000000000 r13: 0x0000000000000000 r14: 0x0000000000000000
r15: 0x0000000000000000
rip: 0x00007fff5fc01028 rfl: 0x0000000000010203 cr2: 0xfffffffffffffff8
Binary images description not available
Model: MacBookPro6,2, BootROM MBP61.0057.B0C, 2 processors, Intel Core i7, 2.66
GHz, 8 GB, SMC 1.58f17
Graphics: NVIDIA GeForce GT 330M, NVIDIA GeForce GT 330M, PCIe, 512 MB
Graphics: Intel HD Graphics, Intel HD Graphics, Built-In, 288 MB
Memory Module: global_name
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x93), Broadcom
BCM43xx 1.0 (5.10.131.42.4)
Bluetooth: Version 2.4.5f3, 2 service, 12 devices, 1 incoming serial ports
Network Service: Ethernet, Ethernet, en0
Network Service: AirPort, AirPort, en1
Serial ATA Device: ST9500420ASG, 465.76 GB
Serial ATA Device: MATSHITADVD-R UJ-898
USB Device: Hub, 0x0424 (SMSC), 0x2514, 0xfa100000 / 2
USB Device: Apple Internal Keyboard / Trackpad, 0x05ac (Apple Inc.), 0x0236,
0xfa120000 / 6
USB Device: Hub, 0x05ac (Apple Inc.), 0x9136, 0xfa140000 / 5
USB Device: Ext HDD 1021, 0x1058 (Western Digital Technologies, Inc.), 0x1021,
0xfa142000 / 14
USB Device: Keyboard Hub, 0x05ac (Apple Inc.), 0x1006, 0xfa141000 / 8
USB Device: Apple Keyboard, 0x05ac (Apple Inc.), 0x0220, 0xfa141200 / 13
USB Device: Hub, 0x05ac (Apple Inc.), 0x9137, 0xfa144000 / 7
USB Device: Apple LED Cinema Display, 0x05ac (Apple Inc.), 0x9236, 0xfa144300
/ 12
USB Device: Display Audio, 0x05ac (Apple Inc.), 0x2912, 0xfa144100 / 11
USB Device: Display iSight, 0x05ac (Apple Inc.), 0x8508, 0xfa144200 / 10
USB Device: BRCM2070 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0xfa110000 / 4
USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.), 0x8218,
0xfa113000 / 9
USB Device: Internal Memory Card Reader, 0x05ac (Apple Inc.), 0x8403,
0xfa130000 / 3
USB Device: Hub, 0x0424 (SMSC), 0x2514, 0xfd100000 / 2
USB Device: IR Receiver, 0x05ac (Apple Inc.), 0x8242, 0xfd120000 / 5
USB Device: Built-in iSight, 0x05ac (Apple Inc.), 0x8507, 0xfd110000 / 4
USB Device: Microsoft 3-Button Mouse with IntelliEye(TM), 0x045e (Microsoft
Corporation), 0x0040, 0xfd130000 / 3
Blaine Mooers
Assistant Professor
Department of Biochemistry and Molecular Biology
University of Oklahoma Health Sciences Center
S.L. Young Biomedical Research Center Rm. 466
Shipping address:
975 NE 10th Street, BRC 466
Oklahoma City, OK 73104-5419
Letter address:
P.O. Box 26901, BRC 466
Oklahoma City, OK 73190
office: (405) 271-8300 lab: (405) 271-8313 fax: (405) 271-3910
e-mail: blaine-moo...@ouhsc.edu<mailto:blaine-moo...@ouhsc.edu>
Faculty webpage:
http://www.oumedicine.com/department-of-biochemistry-and-molecular-biology/faculty/blaine-mooers-ph-d-
X-ray lab webpage:
http://www.oumedicine.com/department-of-biochemistry-and-molecular-biology/department-facilities/macromolecular-crystallography-laboratory
Small Angle Scattering webpage:
http://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/small-angle-scattering-links.html?sfvrsn=0
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