Hello PyMOL users, Say, I have three pdb files loaded onto PyMOL. Lets assume that each of the pdb file has 3 chains, i.e A,B,C in them.
If I want to select residues 1,5,6,7 in chain A of Protein_1, residues 4,8,9,12 in chain B of Protein_2 and residues 1,5,12,43 in chain A of Protein_3. I know the command to select residues, i.e select name1, resi 1+5+6+7 and chain A , but when i execute this command, residues 1&5 of chainA of the Protein_1 and Protein_3, are selected. How do I specify that the selection has to be at the chain A in Protein_1 ? I tried loading the files one by one and doing this, but when I come to the third pdb file and execute the select command, I am running in to the same problem,i.e residues 1 and 5 of protein_1 are also getting selected. How do i avoid this ? Some additional syntax required ? Also, once this is done, how to align these selections spanning 3 different chains among 3 separate proteins ? Will the align command suffice ? Please let me know. Thanks & Regards, Anasuya Dighe Molecular Biophysics Unit Annexe, Indian Institute of Science, Bangalore - 560012 INDIA -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. ------------------------------------------------------------------------------ Get 100% visibility into Java/.NET code with AppDynamics Lite! It's a free troubleshooting tool designed for production. Get down to code-level detail for bottlenecks, with <2% overhead. Download for free and get started troubleshooting in minutes. http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
