Thanks for the reply. Of course you are correct that anaglyph in Pymol is 'optimised' for red/cyan glasses, despite the fact that the Pymol wiki says stereo mode 10 is for green/magenta ones (which is where I got the idea when it all went wrong for me).
I have a learned a few things not to do in Pymol to use anaglyph, and I have not found this info documented anywhere so here are a couple of problems. My big mistake was starting with point 1 ;-) 1) do not use a black background 2) do not use "setting > rendering > modernize" 3) be careful with setting quality too high (especially on spheres) There are probably other things for me to find not to do. I used point (2) as a quick way to get a nice rendering, without knowing exactly what it does. It does change all the colours so that anglyph no longer works. Is there a way to reset it? And a way to reset all edited settings back to default? Gary Prof. Gary J. Hunter, Department of Physiology and Biochemistry University of Malta, Msida, MSD 2080, Malta. phone: +356 2340 2917 phone: +356 21316655 (secretary), Fax: +356 21310577 http://www.um.edu.mt/ms/physbiochem On 18/06/2013 09:59, "Thomas Holder" <thomas.hol...@schrodinger.com> wrote: >Hi Gary, > >actually PyMOL should be optimized for red/cyan and not green/magenta. >There is no option to change the colors, sorry. > >In PyMOL 1.5 anaglyph has been improved and there are is an >"anaglyph_mode" settings which defaults to 4 ("optimized anaglyph"). >Other reasonable values are 3 ("half-color") and 1 (gray). > >http://pymol.org/dsc/dokuwiki/doku.php?id=setting:anaglyph_mode > >If you really need to change the colors, you could take the open-source >code and tweak the anaglyph_mode matrix in layer1/Scene.c > >Hope that helps. > >Cheers, > Thomas > >Gary Hunter wrote, On 06/17/13 09:53: >> Is there a way to customise the colours used in anaglyph stereo mode? >> Anaglyph mode has been optimised for green/magenta glasses but I have >> lots of red/cyan ones so I'd like to change the colours used if I can. >> Gary >> >> Prof. Gary J. Hunter, >> Department of Physiology and Biochemistry >> University of Malta, Msida, MSD 2080, Malta. >> phone: +356 2340 2917 >> phone: +356 21316655 (secretary), Fax: +356 21310577 >> http://www.um.edu.mt/ms/physbiochem > >-- >Thomas Holder >PyMOL Developer >Schrödinger Contractor > >-------------------------------------------------------------------------- >---- >This SF.net email is sponsored by Windows: > >Build for Windows Store. > >http://p.sf.net/sfu/windows-dev2dev >_______________________________________________ >PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > ------------------------------------------------------------------------------ This SF.net email is sponsored by Windows: Build for Windows Store. http://p.sf.net/sfu/windows-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
