Dear Amna (?),
2012/11/11 amna khan <amnakhan...@gmail.com>
> hi,
>
> i want to calculate the electron density maps for my docked protein from
> autodock4.2, when i load. fld.maps file generated by autodock and my docked
> protein at same time , no maps are generated.
>
1. electron density maps are calculated from experimental data and model
phases. No computer program will ever give you any (real) electron density.
I think you are confusing the terms here.
2. Are you trying to dock a ligand, or dock two proteins together? There
is a very nice plugin (http://www.pymolwiki.org/index.php/Autodock_plugin)
by Daniel Seeliger. I would use that.
Hope this helps
Folmer Fredslund
>
> please help
>
> regards
>
>
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--
Folmer Fredslund
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