Hi Alison, Can you provide a sample image of what you're talking about? Feel free to email me directly and attach an image.
A quick suggestion would be to try Grid Mode, especially if you're viewing surfaces of aligned proteins. See http://www.pymolwiki.org/index.php/Grid_mode. Cheers, -- Jason On Tue, Sep 25, 2012 at 1:38 PM, alison cuff <alic...@gmail.com> wrote: > Hi there > > I am fairly new to pymol and am currently using it to visualise > superpositions of 2 protein structures. However, I have noticed that a lot > of structural detail is lost in regions where the structures are very > similar and - instead of seeing two proteins nicely superimposed - I get > fragments or some structural data missing altogether. > > Is there a way to counteract this problem please? > > All advice much appreciated!!! > > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ How fast is your code? 3 out of 4 devs don\\\'t know how their code performs in production. Find out how slow your code is with AppDynamics Lite. http://ad.doubleclick.net/clk;262219672;13503038;z? http://info.appdynamics.com/FreeJavaPerformanceDownload.html _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
