Hi Ian, PyMOL doesn't yet have that functionality. We've recorded this case and will let the community know how development proceeds. I could imagine adding a suite of volumetric tools could be very useful. What else would you like to see?
Cheers, -- Jason On Sun, Sep 16, 2012 at 12:48 PM, Ian Berke <ian.be...@yale.edu> wrote: > Hi, > > I have a volumetric map from an EM reconstruction I loaded into pymol and > contoured at 4sigma (it went through the normal statistical averaging and > normalization in pymol). I'd like to calculate the volume enclosed by the > 4sigma contour, so that I can calculate an estimated mass. Does anyone have > a script with that functionality? I'd rather not have to fire up chimera to > do this as it's buggy on my computer. > > Ian > --------------------- > Ian Berke, PhD > Associate Research Scientist, Modis Lab > Department of Molecular Biophysics and Biochemistry > Yale University > 266 Whitney Ave, Bass 431 > New Haven, CT 06520 > (203) 432-4414 > > > > ------------------------------------------------------------------------------ > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > http://ad.doubleclick.net/clk;258768047;13503038;j? > http://info.appdynamics.com/FreeJavaPerformanceDownload.html > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
