Hi all, I thought it would be nice to run such tools directly from PyMOL. So there is a PoseView wrapper on the PyMOLWiki now:
http://pymolwiki.org/index.php/PoseView A LigPlot wrapper may follow... Cheers, Thomas On 06/26/2012 10:13 AM, James Starlight wrote: > Christian, > Also I've found the same software- pose view (in that article I've also > found link on it). Its very friendly but I've noticed some erorrs during > representation of the non-covalent contacts partly in case of the vdw > interactions ( e,g i've change cutof from 0.8 to 1.2 nm for vdw but some > crussial interactions could not be visualized) > And the main disadvantage of that software is that it does not take into > account burrial water and it's h-bond networks within protein. > I've ordered free license on the lig prot and hope that this software > will be better ;) > James > 2012/6/26 Christian Roth <christian.r...@bbz.uni-leipzig.de > <mailto:christian.r...@bbz.uni-leipzig.de>> > > Hi James, > > LigPlot is free for academic users. You just have to verify that you > are a > academic user. MOE does a simimlar representiation but is definitely > not free. > > Christian -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
