Hi all,
Tsjerk- Thanks. I'm not sure how I missed that, given that it's even
mentioned on the wiki on the surface page under the clear heading
"Exporting Surface/Mesh Coordinates to File" :-|. (
http://www.pymolwiki.org/index.php/Surface#Exporting_Surface.2FMesh_Coordinates_to_File).
I don't know anything about VRML, but I found some documentation online at
http://www.c3.hu/cryptogram/vrmltut/part5.html and it looks really
straightforward. The surface will show up in the VRML file as an
IndexedFaceSet, and the points are just XYZ triples, and I can safely
ignore everything else.
Darrell- Thanks. I'll build that in as an option.
Takanori- Thanks. That's really cool. I happen to want solvent accessible
surfaces rather than isosurfaces, but "dump" is definitely going into my
bag of tricks.
Cheers,
-Michael
On Mon, Jun 11, 2012 at 8:57 PM, Takanori Nakane <
t.nak...@mail.mfour.med.kyoto-u.ac.jp> wrote:
> Hi,
>
> Another way:
> There is an undocumented API called 'dump', which can
> dump coordinates of isomesh/isosurface to a file.
>
> For mesh, it dumps a list of vertex coordinates, which
> can be rendered as GL_LINE_STRIP.
> For surface, it dumps a list of pairs of a vertex coordinate
> and its vertex normal vector, which can be rendered as GL_TRIANGLES.
>
> Please examine my old post for a script example.
> http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg10012.html
>
> Best regards,
>
> Takanori Nakane
>
>
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--
Michael Lerner
Department of Physics and Astronomy
Earlham College - Drawer 111
801 National Road West
Richmond, IN 47374-4095
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