I am sure this has been asked many times before but I can't find the answer after much searching...
Is there a pymol script that, given a ligand within a protein binding pocket, will detect nearest neighbors within X distance (not necessarily H bonded), select the residue of each neighbor, add a label, set an appropriate clipping plane, then shade the rest of the molecular as solid or something otherwise non hostile to viewing. Something like ligplot but in 3-D. Many thanks, Dr Jeff Johns Melatonin Research Group Faculty of Pharmaceutical Sciences Khon Kaen University Khon Kaen 40002 Thailand Phone: +66 (0)43 202 378 Email: jj...@kku.ac.th Alternative email: jeffjohn...@hotmail.com ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
