Hi all, I would like to make a figure of my protein-ligand complex for publication. I would like to clearly show the density for the ligand in the binding cavity. I tried to show it as mesh but the figure is not very informative. Can anyone help me with clear steps how to get such informative figure with clear density map for the interacting residues and with different color for the electron density of ligand.
Any help with coot would also be helpful. (I could not obtain publication quality figure with coot in white background, also the representation of ball and sticks just for binding residues avoiding other non interacting residues were difficult.) Thanx in advance Best regards, Bishwa ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
