Thank you Jason, Actually this is exactly where I got stuck. With the commands below, each of the bases is colored differently *except* the center of the ring, which is set to a constant value (green in this case). What I'm wanting is to have each base appear as a single solid color.
DMS On May 23, 2012, at 2:16 PM, Jason Vertrees wrote: > Hi DMS, > > fetch 3r8t, async=0 > as cartoon > > set cartoon_ring_mode, 3 > > set cartoon_nucleic_acid_color, magenta > > # use 'resn' and the one letter nucleotide codes > > color blue, resn A > color green, resn C > color yellow, resn T+U > color orange, resn G > > Cheers, > > -- Jason > > On Wed, May 23, 2012 at 12:44 PM, Daron Standley > <stand...@ifrec.osaka-u.ac.jp> wrote: >> Hi. I want to make a figure of an RNA molecules similar to the DNA >> molecule shown here: >> >> http://kpwu.files.wordpress.com/2011/07/2l8q-cartoon-ring-v1.png >> >> However, I want each nucleotide type (A,T/U,G,C) colored differently. I >> managed to get everything but the center of the ring colored the way I >> wanted. >> I can set the "cartoon_ring_color" to a given color but I don't know how >> to give each nucleotide its own ring color. Can anyone help? >> >> Thanks >> >> DMS >> ------------------------------------------------------------------------------ >> Live Security Virtual Conference >> Exclusive live event will cover all the ways today's security and >> threat landscape has changed and how IT managers can respond. Discussions >> will include endpoint security, mobile security and the latest in malware >> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrödinger, LLC > > (e) jason.vertr...@schrodinger.com > (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
