Hi, Sorry about the lack of description in the previous post. The chemicals show incorrect bond connections. Some of the rings go missing. In all, the structure changes and just by looking at it, its possible to tell that the structure is not right. I didn't see much details though, except that the atom connections seem to be wrong.
Thanks, Ritu On 05/23/12, Folmer Fredslund wrote: > Hi Ritu, > > Could you elaborate on "some of the ligand structures get completely messed > up when viewed as sticks or lines"? > > To get the best possible answer a few more details would help. > > Best regards, > Folmer > > 2012/5/23 Rituparna Sengupta <PyMOL-users@lists.sourceforge.net > <rsengu...@wisc.edu')" target="1">rsengu...@wisc.edu> > > > Hi, > > > > Just observed something weird. When I try loading protein -ligand complexes > > as frames of a movie (same protein but different ligands for different > > frames), some of the ligand structures get completely messed up when viewed > > as sticks or lines. Right now I'm using spheres instead, but wondering > > if there's a way to work around the problem and still view the ligands > > as sticks/lines. > > > > > > Thanks, > > Ritu > > > > ------------------------------------------------------------------------------ > > Live Security Virtual Conference > > Exclusive live event will cover all the ways today's security and > > threat landscape has changed and how IT managers can respond. Discussions > > will include endpoint security, mobile security and the latest in malware > > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > > _______________________________________________ > > PyMOL-users mailing list > > (https://lists.sourceforge.net/lists/listinfo/pymol-users(javascript:main.compose('new', > > 't=PyMOL-users@lists.sourceforge.net>) > > Info Page: <a href=) > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > > > > -- > Folmer Fredslund ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
