Hi Bishwa, PyMOL lacks the feature to save secondary structure to PDB files. But you could install "psico" which is a add-on to PyMOL. It adds a "save_pdb" command (or overloads the save command if you like) which does write PDB files including secondary structure header.
http://pymolwiki.org/index.php/Psico Hope that helps. Cheers, Thomas On 04/23/2012 12:07 AM, Bishwa Subedi wrote: > Hi, > > I altered the secondary structure of the protein using alter command. > I have the PDB file with the correct secondary structure and their > appropriate length. But how can I save this information into my PDB > coordinate file such that when I reopen the file I do not have to > repeat the command again? > > Thank you in advance > > Bishwa -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ For Developers, A Lot Can Happen In A Second. Boundary is the first to Know...and Tell You. Monitor Your Applications in Ultra-Fine Resolution. Try it FREE! http://p.sf.net/sfu/Boundary-d2dvs2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
